Hi VL,
Do you think its leaking in the same area you just repaired, or some where else?
As another possible option, what about doing a layer of the cement board with PA like you did on your 1500 build? That seemed to work out very well for you on that build; enough so that it convinced me to use a layer of cement board if I do another build or major repair overhaul on my 3000 gal. tank.
FWIW, (and I don't know if this translates into liquid rubber over PA), but I have found that silicone 1 stuck great to PA when dry, only to peel off in strips and float around my tank after it was under water for a while. It was not the PA either, the silicone just cleanly peeled away from the PA after being under water. If you do go this route, maybe do a test and soak a sample Zavlar on pond armor connection under water for a while???
Hang in there, you are making foreward progress, its just a matter of time.
Also, I like your idea to build a temp "pond" to move your fish and get the old house sale on the way. This way you won't be pressured to finish, but be able to take the time to do things the right way.